_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-12
 Query name: gi|974089520|ref|XP_015242936.1| PREDICTED: migration and invasion enhancer 1 [Cyprinodon variegatus]
 Query range: 1-95  (total 95)

 Target: /data/www-rg/seblastian_results/562054271/tempfiles/temptarget.fasta
 Chromosome: OMLM01020360.1:subseq_13508,58205_ Strand: -
 Positions:
 -Exon 1  50522        50550
 -Exon 2  50216        50313
 -Exon 3  50003        50079
 -Exon 4  49777        49857

 Redox box: YES

Query   MGVKIRVEYC <---Intron---> GGUGYEPRYRELANVVKSEFPEAEVSGFVGRRG <---Intron---> SFEIEINDQLVFSKLETGGFPYEDD
        |||/|||||| <   208bp    > | |||||||||||/||| |||/||||||||||  <   136bp    > ||||||| ||/||||||||||||||
Target  MGVQIRVEYC                GAUGYEPRYRELAHVVKDEFPDAEVSGFVGRRS                SFEIEINGQLIFSKLETGGFPYEDD
        aggcaaggtt                ggtgtgcctcgcgcggaggtcggggtgtggaaa                atgagaagccattacgaggtctggg
        tgtatgtaag                gcggaacgagatcattaaatcacatcgttggg                ggtatatagatttcatacggtcaaaa
        ggaatacgc                tgaaacacctggctccggcgtttgagtccgaaa                cctgaactggccccgtgttctatgtc
                                    *                                                                       

Query    <---Intron---> ILGTIQKAREGKPLEKITKSRAPCVIM
         <   145bp    > ||  ||/| /|||/ ||||/|||||||
Target                  ILNAIQQAHDGKPVPKITKARAPCVIM
                        atagaccgcggacgcaaaagcgctgaa
                        ttactaacaagactcatcacgccgttt
                        cgcatggttcgatgggccactaacctg
                                                   
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 189 ; UGA-SECIS: 435

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = OMLM01020360.1:subseq_13508,58205_ Strand = - Positions = 49587 - 49518
 Found by:  Infernal (score=25.81) Covels (score=27.36)
 Stem2 length = 11   Apical loop length = 8   Insertion in stem2 = 1, 0
 Free Energy = -18.92

         ..(((((((.......((((((((((.(((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         .((((((((.--....{[[{((((((.(((((.....--.-----..)))))))))))}]]}.....-...)))))))).
 target  CUUCUGGGUG--UUAAUGAUUACUGUAGCCUAAAAUU--A-----AAUGGGUACGGUAUGAUGAAUC-CAAACCUGGAGU
                         ****            ^^^                       ****